3D structure

PDB id
6GQV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CAAAUAU*AG*UGAU*AG
Length
15 nucleotides
Bulged bases
6GQV|1|1|A|1452, 6GQV|1|1|U|1455
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6GQV_003 not in the Motif Atlas
Homologous match to J4_8P9A_014
Geometric discrepancy: 0.2825
The information below is about J4_8P9A_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_87855.1
Basepair signature
cWW-F-cWW-F-F-F-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

6GQV|1|1|C|1451
6GQV|1|1|A|1452
6GQV|1|1|A|1453
6GQV|1|1|A|1454
6GQV|1|1|U|1455
6GQV|1|1|A|1456
6GQV|1|1|U|1457
*
6GQV|1|1|A|1475
6GQV|1|1|G|1476
*
6GQV|1|1|U|1877
6GQV|1|1|G|1878
6GQV|1|1|A|1879
6GQV|1|1|U|1880
*
6GQV|1|1|A|2352
6GQV|1|1|G|2353

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain P
60S ribosomal protein L17-A
Chain R
60S ribosomal protein L19-A
Chain d
60S ribosomal protein L31-A

Coloring options:


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