J4_6GQV_014

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACUAUG*UU

Length

23 nucleotides

Bulged bases

6GQV|1|2|A|623, 6GQV|1|2|U|1029, 6GQV|1|2|U|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GQV_014 not in the Motif Atlas

Homologous match to J4_8P9A_022

Geometric discrepancy: 0.1604

The information below is about J4_8P9A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

6GQV|1|2|A|622
6GQV|1|2|A|623
6GQV|1|2|G|624
*
6GQV|1|2|C|975
6GQV|1|2|G|976
6GQV|1|2|A|977
6GQV|1|2|A|978
6GQV|1|2|A|979
6GQV|1|2|G|980
*
6GQV|1|2|C|1021
6GQV|1|2|C|1022
6GQV|1|2|A|1023
6GQV|1|2|U|1024
6GQV|1|2|A|1025
6GQV|1|2|A|1026
6GQV|1|2|A|1027
6GQV|1|2|C|1028
6GQV|1|2|U|1029
6GQV|1|2|A|1030
6GQV|1|2|U|1031
6GQV|1|2|G|1032
*
6GQV|1|2|U|1103
6GQV|1|2|U|1104

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S11-A

Chain AD

40S ribosomal protein S13

Chain AE

40S ribosomal protein S14-B

Chain AM

40S ribosomal protein S22-A

Chain AN

40S ribosomal protein S23-A

Chain AQ

40S ribosomal protein S26-B

Chain n

60S ribosomal protein L41-B

Chain p

60S ribosomal protein L43-A