J4_6GSJ_001
3D structure
- PDB id
- 6GSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- GAGUAACG*UC*GUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6GSJ|1|13|C|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GSJ_001 not in the Motif Atlas
- Homologous match to J4_4LFB_001
- Geometric discrepancy: 0.0661
- The information below is about J4_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_90044.1
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6GSJ|1|13|G|115
6GSJ|1|13|A|116
6GSJ|1|13|G|117
6GSJ|1|13|U|118
6GSJ|1|13|A|119
6GSJ|1|13|A|120
6GSJ|1|13|C|121
6GSJ|1|13|G|122
*
6GSJ|1|13|U|239
6GSJ|1|13|C|240
*
6GSJ|1|13|G|286
6GSJ|1|13|U|287
6GSJ|1|13|A|288
6GSJ|1|13|G|289
*
6GSJ|1|13|C|311
6GSJ|1|13|C|312
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 3I
- 30S ribosomal protein S12
- Chain 7I
- 30S ribosomal protein S16
- Chain 8I
- 30S ribosomal protein S17
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