J4_6GSJ_006

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

6GSJ|1|14|G|1271, 6GSJ|1|14|A|1272, 6GSJ|1|14|U|1273, 6GSJ|1|14|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GSJ_006 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.055

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6GSJ|1|14|C|1270
6GSJ|1|14|G|1271
6GSJ|1|14|A|1272
6GSJ|1|14|U|1273
6GSJ|1|14|A|1274
6GSJ|1|14|A|1275
6GSJ|1|14|A|1276
*
6GSJ|1|14|U|1294
6GSJ|1|14|C|1295
*
6GSJ|1|14|G|1645
6GSJ|1|14|C|1646
6GSJ|1|14|G|1647
6GSJ|1|14|C|1648
*
6GSJ|1|14|G|2009
6GSJ|1|14|G|2010

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 55

50S ribosomal protein L17

Chain A5

50S ribosomal protein L22

Chain J5

50S ribosomal protein L32