J4_6GSJ_007

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6GSJ|1|14|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GSJ_007 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.086

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GSJ|1|14|G|1310
6GSJ|1|14|G|1311
6GSJ|1|14|U|1312
6GSJ|1|14|U|1313
6GSJ|1|14|C|1314
*
6GSJ|1|14|G|1338
6GSJ|1|14|G|1339
6GSJ|1|14|U|1340
6GSJ|1|14|U|1341
6GSJ|1|14|A|1342
6GSJ|1|14|G|1343
*
6GSJ|1|14|C|1404
6GSJ|1|14|U|1405
*
6GSJ|1|14|A|1597
6GSJ|1|14|C|1598
6GSJ|1|14|C|1599
6GSJ|1|14|C|1600
6GSJ|1|14|G|1601
6GSJ|1|14|U|1602
6GSJ|1|14|A|1603
6GSJ|1|14|C|1604

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23

Chain L5

50S ribosomal protein L34