J4_6GSJ_016
3D structure
- PDB id
- 6GSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 6GSJ|1|1G|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GSJ_016 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0519
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6GSJ|1|1G|G|575
6GSJ|1|1G|G|576
6GSJ|1|1G|G|577
*
6GSJ|1|1G|C|764
6GSJ|1|1G|G|765
6GSJ|1|1G|A|766
6GSJ|1|1G|A|767
6GSJ|1|1G|A|768
6GSJ|1|1G|G|769
*
6GSJ|1|1G|C|810
6GSJ|1|1G|C|811
6GSJ|1|1G|C|812
6GSJ|1|1G|U|813
6GSJ|1|1G|A|814
6GSJ|1|1G|A|815
6GSJ|1|1G|A|816
6GSJ|1|1G|C|817
6GSJ|1|1G|G|818
6GSJ|1|1G|A|819
6GSJ|1|1G|U|820
6GSJ|1|1G|G|821
*
6GSJ|1|1G|C|879
6GSJ|1|1G|C|880
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3A
- 30S ribosomal protein S12
- Chain 6A
- 30S ribosomal protein S15
- Chain 72
- 30S ribosomal protein S8
- Chain 8A
- 30S ribosomal protein S17
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