J4_6GSJ_017

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6GSJ|1|1H|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GSJ_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1447

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6GSJ|1|1H|C|268
6GSJ|1|1H|U|269
*
6GSJ|1|1H|G|370
6GSJ|1|1H|A|371
6GSJ|1|1H|G|372
6GSJ|1|1H|U|373
6GSJ|1|1H|A|374
6GSJ|1|1H|C|375
*
6GSJ|1|1H|G|399
6GSJ|1|1H|G|400
6GSJ|1|1H|A|401
6GSJ|1|1H|A|402
6GSJ|1|1H|U|403
6GSJ|1|1H|C|404
6GSJ|1|1H|U|405
6GSJ|1|1H|G|406
*
6GSJ|1|1H|U|421
6GSJ|1|1H|A|422
6GSJ|1|1H|A|423
6GSJ|1|1H|G|424

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 61

50S ribosomal protein L9

Chain J8

50S ribosomal protein L28