J4_6GSK_004

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6GSK|1|14|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GSK_004 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1194

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6GSK|1|14|C|268
6GSK|1|14|U|269
*
6GSK|1|14|G|370
6GSK|1|14|A|371
6GSK|1|14|G|372
6GSK|1|14|U|373
6GSK|1|14|A|374
6GSK|1|14|C|375
*
6GSK|1|14|G|399
6GSK|1|14|G|400
6GSK|1|14|A|401
6GSK|1|14|A|402
6GSK|1|14|U|403
6GSK|1|14|C|404
6GSK|1|14|U|405
6GSK|1|14|G|406
*
6GSK|1|14|U|421
6GSK|1|14|A|422
6GSK|1|14|A|423
6GSK|1|14|G|424

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 69

50S ribosomal protein L9

Chain F5

50S ribosomal protein L28