J4_6GSK_011

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

6GSK|1|14|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GSK_011 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0826

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6GSK|1|14|U|1833
6GSK|1|14|U|1834
6GSK|1|14|G|1835
*
6GSK|1|14|C|1905
6GSK|1|14|G|1906
*
6GSK|1|14|C|1924
6GSK|1|14|C|1925
6GSK|1|14|U|1926
6GSK|1|14|A|1927
6GSK|1|14|A|1928
6GSK|1|14|G|1929
6GSK|1|14|G|1930
6GSK|1|14|U|1931
6GSK|1|14|A|1932
6GSK|1|14|G|1933
*
6GSK|1|14|C|1967
6GSK|1|14|G|1968
6GSK|1|14|A|1969
6GSK|1|14|A|1970
6GSK|1|14|A|1971
6GSK|1|14|A|1972

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 2L

Transfer RNA; tRNA