J4_6GSK_014

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6GSK|1|1G|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GSK_014 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0752

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6GSK|1|1G|G|115
6GSK|1|1G|A|116
6GSK|1|1G|G|117
6GSK|1|1G|U|118
6GSK|1|1G|A|119
6GSK|1|1G|A|120
6GSK|1|1G|C|121
6GSK|1|1G|G|122
*
6GSK|1|1G|U|239
6GSK|1|1G|C|240
*
6GSK|1|1G|G|286
6GSK|1|1G|U|287
6GSK|1|1G|A|288
6GSK|1|1G|G|289
*
6GSK|1|1G|C|311
6GSK|1|1G|C|312

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 7A

30S ribosomal protein S16

Chain 8A

30S ribosomal protein S17