J4_6GSK_019

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

6GSK|1|1H|G|1271, 6GSK|1|1H|A|1272, 6GSK|1|1H|U|1273, 6GSK|1|1H|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GSK_019 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.066

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6GSK|1|1H|C|1270
6GSK|1|1H|G|1271
6GSK|1|1H|A|1272
6GSK|1|1H|U|1273
6GSK|1|1H|A|1274
6GSK|1|1H|A|1275
6GSK|1|1H|A|1276
*
6GSK|1|1H|U|1294
6GSK|1|1H|C|1295
*
6GSK|1|1H|G|1645
6GSK|1|1H|C|1646
6GSK|1|1H|G|1647
6GSK|1|1H|C|1648
*
6GSK|1|1H|G|2009
6GSK|1|1H|G|2010

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 98

50S ribosomal protein L17

Chain E8

50S ribosomal protein L22

Chain N8

50S ribosomal protein L32