J4_6GSK_029

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GUGG*CGUC*GAAGGUCG*CC

Length

18 nucleotides

Bulged bases

6GSK|1|2L|U|8, 6GSK|1|2L|U|48, 6GSK|1|2L|C|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GSK_029 not in the Motif Atlas

Homologous match to J4_1QF6_001

Geometric discrepancy: 0.3023

The information below is about J4_1QF6_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_94519.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6GSK|1|2L|G|7
6GSK|1|2L|U|8
6GSK|1|2L|G|9
6GSK|1|2L|G|10
*
6GSK|1|2L|C|26
6GSK|1|2L|G|27
6GSK|1|2L|U|28
6GSK|1|2L|C|29
*
6GSK|1|2L|G|43
6GSK|1|2L|A|44
6GSK|1|2L|A|45
6GSK|1|2L|G|46
6GSK|1|2L|G|47
6GSK|1|2L|U|48
6GSK|1|2L|C|49
6GSK|1|2L|G|50
*
6GSK|1|2L|C|66
6GSK|1|2L|C|67

Current chains

Chain 2L

tRNAfMet

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 1L

Transfer RNA; tRNA

Chain 45

50S ribosomal protein L16

Chain 4A

30S ribosomal protein S13

Chain E5

50S ribosomal protein L27