J4_6GSL_001

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6GSL|1|13|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GSL_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0789

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6GSL|1|13|G|115
6GSL|1|13|A|116
6GSL|1|13|G|117
6GSL|1|13|U|118
6GSL|1|13|A|119
6GSL|1|13|A|120
6GSL|1|13|C|121
6GSL|1|13|G|122
*
6GSL|1|13|U|239
6GSL|1|13|C|240
*
6GSL|1|13|G|286
6GSL|1|13|U|287
6GSL|1|13|A|288
6GSL|1|13|G|289
*
6GSL|1|13|C|311
6GSL|1|13|C|312

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 3I

30S ribosomal protein S12

Chain 7I

30S ribosomal protein S16

Chain 8I

30S ribosomal protein S17