J4_6GSL_022

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

6GSL|1|1H|A|1444|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GSL_022 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.2533

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6GSL|1|1H|G|1444
6GSL|1|1H|A|1444|||A
6GSL|1|1H|C|1445
*
6GSL|1|1H|G|1466
6GSL|1|1H|C|1467
*
6GSL|1|1H|G|1525
6GSL|1|1H|G|1526
*
6GSL|1|1H|C|1546
6GSL|1|1H|C|1547

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains