J4_6GSN_003
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6GSN|1|2|A|622, 6GSN|1|2|U|1023, 6GSN|1|2|A|1025, 6GSN|1|2|C|1027, 6GSN|1|2|U|1028, 6GSN|1|2|A|1029, 6GSN|1|2|U|1030
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GSN_003 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.1464
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6GSN|1|2|A|621
6GSN|1|2|A|622
6GSN|1|2|G|623
*
6GSN|1|2|C|974
6GSN|1|2|G|975
6GSN|1|2|A|976
6GSN|1|2|A|977
6GSN|1|2|A|978
6GSN|1|2|G|979
*
6GSN|1|2|C|1020
6GSN|1|2|C|1021
6GSN|1|2|A|1022
6GSN|1|2|U|1023
6GSN|1|2|A|1024
6GSN|1|2|A|1025
6GSN|1|2|A|1026
6GSN|1|2|C|1027
6GSN|1|2|U|1028
6GSN|1|2|A|1029
6GSN|1|2|U|1030
6GSN|1|2|G|1031
*
6GSN|1|2|U|1102
6GSN|1|2|U|1103
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain L
- KLLA0A10483p
- Chain N
- KLLA0F18040p
- Chain O
- 40S ribosomal protein S14
- Chain W
- 40S ribosomal protein S22
- Chain X
- RPS23
- Chain a
- 40S ribosomal protein S26
- Chain h
- 60S ribosomal protein L41-A
- Chain p
- Eukaryotic translation initiation factor 3 subunit B
- Chain q
- Eukaryotic translation initiation factor 3 subunit C
Coloring options: