J4_6GWT_001

3D structure

PDB id

6GWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6GWT|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GWT_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2035

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6GWT|1|A|C|268
6GWT|1|A|C|269
*
6GWT|1|A|G|370
6GWT|1|A|A|371
6GWT|1|A|G|372
6GWT|1|A|U|373
6GWT|1|A|A|374
6GWT|1|A|G|375
*
6GWT|1|A|U|399
6GWT|1|A|G|400
6GWT|1|A|A|401
6GWT|1|A|A|402
6GWT|1|A|U|403
6GWT|1|A|A|404
6GWT|1|A|U|405
6GWT|1|A|G|406
*
6GWT|1|A|C|421
6GWT|1|A|A|422
6GWT|1|A|A|423
6GWT|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28