J4_6GWT_013
3D structure
- PDB id
- 6GWT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAG*CAUAACG*CCAAAG*UGC
- Length
- 19 nucleotides
- Bulged bases
- 6GWT|1|a|C|183, 6GWT|1|a|A|197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GWT_013 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.1914
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6GWT|1|a|G|142
6GWT|1|a|A|143
6GWT|1|a|G|144
*
6GWT|1|a|C|178
6GWT|1|a|A|179
6GWT|1|a|U|180
6GWT|1|a|A|181
6GWT|1|a|A|182
6GWT|1|a|C|183
6GWT|1|a|G|184
*
6GWT|1|a|C|193
6GWT|1|a|C|194
6GWT|1|a|A|195
6GWT|1|a|A|196
6GWT|1|a|A|197
6GWT|1|a|G|198
*
6GWT|1|a|U|219
6GWT|1|a|G|220
6GWT|1|a|C|221
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain t
- 30S ribosomal protein S20
Coloring options: