J4_6GXM_004

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6GXM|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GXM_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1422

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GXM|1|A|G|1310
6GXM|1|A|G|1311
6GXM|1|A|U|1312
6GXM|1|A|U|1313
6GXM|1|A|C|1314
*
6GXM|1|A|G|1338
6GXM|1|A|G|1339
6GXM|1|A|U|1340
6GXM|1|A|G|1341
6GXM|1|A|A|1342
6GXM|1|A|G|1343
*
6GXM|1|A|C|1404
6GXM|1|A|U|1405
*
6GXM|1|A|A|1597
6GXM|1|A|A|1598
6GXM|1|A|U|1599
6GXM|1|A|C|1600
6GXM|1|A|G|1601
6GXM|1|A|U|1602
6GXM|1|A|A|1603
6GXM|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23