J4_6GXO_001

3D structure

PDB id

6GXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6GXO|1|A|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GXO_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1987

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6GXO|1|A|C|268
6GXO|1|A|C|269
*
6GXO|1|A|G|370
6GXO|1|A|A|371
6GXO|1|A|G|372
6GXO|1|A|U|373
6GXO|1|A|A|374
6GXO|1|A|G|375
*
6GXO|1|A|U|399
6GXO|1|A|G|400
6GXO|1|A|A|401
6GXO|1|A|A|402
6GXO|1|A|U|403
6GXO|1|A|A|404
6GXO|1|A|U|405
6GXO|1|A|G|406
*
6GXO|1|A|C|421
6GXO|1|A|A|422
6GXO|1|A|A|423
6GXO|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28