J4_6GXP_001

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6GXP|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GXP_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2052

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6GXP|1|A|C|268
6GXP|1|A|C|269
*
6GXP|1|A|G|370
6GXP|1|A|A|371
6GXP|1|A|G|372
6GXP|1|A|U|373
6GXP|1|A|A|374
6GXP|1|A|G|375
*
6GXP|1|A|U|399
6GXP|1|A|G|400
6GXP|1|A|A|401
6GXP|1|A|A|402
6GXP|1|A|U|403
6GXP|1|A|A|404
6GXP|1|A|U|405
6GXP|1|A|G|406
*
6GXP|1|A|C|421
6GXP|1|A|A|422
6GXP|1|A|A|423
6GXP|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28