J4_6GXP_006

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6GXP|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GXP_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.147

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6GXP|1|A|U|1313
6GXP|1|A|C|1314
*
6GXP|1|A|G|1338
6GXP|1|A|G|1339
6GXP|1|A|U|1340
6GXP|1|A|G|1341
6GXP|1|A|A|1342
6GXP|1|A|G|1343
*
6GXP|1|A|C|1404
6GXP|1|A|U|1405
*
6GXP|1|A|A|1597
6GXP|1|A|A|1598
6GXP|1|A|U|1599
6GXP|1|A|C|1600
6GXP|1|A|G|1601
6GXP|1|A|U|1602
6GXP|1|A|A|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23