J4_6GXP_011

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6GXP|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GXP_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2942

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6GXP|1|a|G|115
6GXP|1|a|A|116
6GXP|1|a|G|117
6GXP|1|a|U|118
6GXP|1|a|A|119
6GXP|1|a|A|120
6GXP|1|a|U|121
6GXP|1|a|G|122
*
6GXP|1|a|U|239
6GXP|1|a|G|240
*
6GXP|1|a|C|286
6GXP|1|a|U|287
6GXP|1|a|A|288
6GXP|1|a|G|289
*
6GXP|1|a|C|311
6GXP|1|a|C|312

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17