J4_6GZ3_013

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAG*CGC*GAGGUCC*GA

Length

16 nucleotides

Bulged bases

6GZ3|1|Bw|U|8, 6GZ3|1|Bw|U|47, 6GZ3|1|Bw|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GZ3_013 not in the Motif Atlas

Homologous match to J4_4V9Q_031

Geometric discrepancy: 0.2642

The information below is about J4_4V9Q_031

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

6GZ3|1|Bw|U|7
6GZ3|1|Bw|U|8
6GZ3|1|Bw|A|9
6GZ3|1|Bw|G|10
*
6GZ3|1|Bw|C|25
6GZ3|1|Bw|G|26
6GZ3|1|Bw|C|27
*
6GZ3|1|Bw|G|43
6GZ3|1|Bw|A|44
6GZ3|1|Bw|G|45
6GZ3|1|Bw|G|46
6GZ3|1|Bw|U|47
6GZ3|1|Bw|C|48
6GZ3|1|Bw|C|49
*
6GZ3|1|Bw|G|65
6GZ3|1|Bw|A|66

Current chains

Chain Bw

pe/E-site-tRNA

Nearby chains

Chain Ao

ribosomal protein eL42

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain BZ

ribosomal protein eS25