J4_6GZ3_014

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GGG

Length

16 nucleotides

Bulged bases

6GZ3|1|A2|A|4196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GZ3_014 not in the Motif Atlas

Homologous match to J4_8CRE_008

Geometric discrepancy: 0.1905

The information below is about J4_8CRE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

6GZ3|1|A2|C|4193
6GZ3|1|A2|U|4194
6GZ3|1|A2|A|4195
6GZ3|1|A2|A|4196
6GZ3|1|A2|G|4197
*
6GZ3|1|A2|U|4251
6GZ3|1|A2|U|4252
6GZ3|1|A2|G|4253
6GZ3|1|A2|A|4254
6GZ3|1|A2|U|4255
*
6GZ3|1|A2|A|4279
6GZ3|1|A2|C|4280
6GZ3|1|A2|C|4281
*
6GZ3|1|A2|G|4290
6GZ3|1|A2|G|4291
6GZ3|1|A2|G|4292

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AD

ribosomal protein uL18

Chain AT

ribosomal protein eL21

Chain Ab

ribosomal protein eL29

Chain Ao

ribosomal protein eL42