J4_6GZ4_008

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUG*CGG*CUUAAGGUAG*UGAAUG

Length

22 nucleotides

Bulged bases

6GZ4|1|A2|U|3789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ4|1|A2|C|3667
6GZ4|1|A2|U|3668
6GZ4|1|A2|G|3669
*
6GZ4|1|A2|C|3723
6GZ4|1|A2|G|3724
6GZ4|1|A2|G|3725
*
6GZ4|1|A2|C|3742
6GZ4|1|A2|U|3743
6GZ4|1|A2|U|3744
6GZ4|1|A2|A|3745
6GZ4|1|A2|A|3746
6GZ4|1|A2|G|3747
6GZ4|1|A2|G|3748
6GZ4|1|A2|U|3749
6GZ4|1|A2|A|3750
6GZ4|1|A2|G|3751
*
6GZ4|1|A2|U|3785
6GZ4|1|A2|G|3786
6GZ4|1|A2|A|3787
6GZ4|1|A2|A|3788
6GZ4|1|A2|U|3789
6GZ4|1|A2|G|3790

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

ribosomal protein uL2

Chain An

ribosomal protein eL41

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain Bv

Transfer RNA; tRNA