J4_6GZ4_013
3D structure
- PDB id
- 6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUAG*CGU*AAGGUCC*GC
- Length
- 16 nucleotides
- Bulged bases
- 6GZ4|1|Bv|U|8, 6GZ4|1|Bv|U|47, 6GZ4|1|Bv|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GZ4_013 not in the Motif Atlas
- Homologous match to J4_6UFG_001
- Geometric discrepancy: 0.183
- The information below is about J4_6UFG_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
6GZ4|1|Bv|G|7
6GZ4|1|Bv|U|8
6GZ4|1|Bv|A|9
6GZ4|1|Bv|G|10
*
6GZ4|1|Bv|C|25
6GZ4|1|Bv|G|26
6GZ4|1|Bv|U|27
*
6GZ4|1|Bv|A|43
6GZ4|1|Bv|A|44
6GZ4|1|Bv|G|45
6GZ4|1|Bv|G|46
6GZ4|1|Bv|U|47
6GZ4|1|Bv|C|48
6GZ4|1|Bv|C|49
*
6GZ4|1|Bv|G|65
6GZ4|1|Bv|C|66
Current chains
- Chain Bv
- ap/P-site tRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AI
- ribosomal protein uL16
- Chain B1
- Small subunit ribosomal RNA; SSU rRNA
- Chain BP
- ribosomal protein uS19
- Chain Ct
- eukaryotic elongation factor 2 (eEF2)
Coloring options: