J4_6GZ4_015

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCUCUC*GCCGGG*CCACGCGCGC*GGCGGAGCGAGC

Length

34 nucleotides

Bulged bases

6GZ4|1|A2|U|967, 6GZ4|1|A2|C|968, 6GZ4|1|A2|C|1220, 6GZ4|1|A2|G|1254, 6GZ4|1|A2|C|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ4|1|A2|G|965
6GZ4|1|A2|C|966
6GZ4|1|A2|U|967
6GZ4|1|A2|C|968
6GZ4|1|A2|U|969
6GZ4|1|A2|C|970
*
6GZ4|1|A2|G|1053
6GZ4|1|A2|C|1054
6GZ4|1|A2|C|1055
6GZ4|1|A2|G|1056
6GZ4|1|A2|G|1057
6GZ4|1|A2|G|1058
*
6GZ4|1|A2|C|1219
6GZ4|1|A2|C|1220
6GZ4|1|A2|A|1221
6GZ4|1|A2|C|1222
6GZ4|1|A2|G|1223
6GZ4|1|A2|C|1224
6GZ4|1|A2|G|1225
6GZ4|1|A2|C|1226
6GZ4|1|A2|G|1227
6GZ4|1|A2|C|1228
*
6GZ4|1|A2|G|1248
6GZ4|1|A2|G|1249
6GZ4|1|A2|C|1250
6GZ4|1|A2|G|1251
6GZ4|1|A2|G|1252
6GZ4|1|A2|A|1253
6GZ4|1|A2|G|1254
6GZ4|1|A2|C|1255
6GZ4|1|A2|G|1256
6GZ4|1|A2|A|1257
6GZ4|1|A2|G|1258
6GZ4|1|A2|C|1259

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain AF

ribosomal protein uL30