J4_6GZ5_001
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 6GZ5|1|A2|C|303
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GZ5_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1788
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6GZ5|1|A2|C|111
6GZ5|1|A2|C|112
*
6GZ5|1|A2|G|272
6GZ5|1|A2|A|273
6GZ5|1|A2|G|274
6GZ5|1|A2|U|275
6GZ5|1|A2|C|276
6GZ5|1|A2|G|277
*
6GZ5|1|A2|C|298
6GZ5|1|A2|A|299
6GZ5|1|A2|A|300
6GZ5|1|A2|A|301
6GZ5|1|A2|G|302
6GZ5|1|A2|C|303
6GZ5|1|A2|G|304
*
6GZ5|1|A2|U|321
6GZ5|1|A2|A|322
6GZ5|1|A2|A|323
6GZ5|1|A2|G|324
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AL
- ribosomal protein eL13
- Chain AN
- ribosomal protein eL15
- Chain Ah
- ribosomal protein uL29
- Chain Ai
- ribosomal protein eL36
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