J4_6GZ5_003

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6GZ5|1|A2|A|2345, 6GZ5|1|A2|U|2348, 6GZ5|1|A2|U|2807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GZ5_003 not in the Motif Atlas

Homologous match to J4_8GLP_004

Geometric discrepancy: 0.1092

The information below is about J4_8GLP_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ5|1|A2|C|2344
6GZ5|1|A2|A|2345
6GZ5|1|A2|A|2346
6GZ5|1|A2|A|2347
6GZ5|1|A2|U|2348
6GZ5|1|A2|A|2349
6GZ5|1|A2|U|2350
*
6GZ5|1|A2|A|2368
6GZ5|1|A2|G|2369
6GZ5|1|A2|G|2370
*
6GZ5|1|A2|C|2803
6GZ5|1|A2|A|2804
6GZ5|1|A2|U|2805
6GZ5|1|A2|G|2806
6GZ5|1|A2|U|2807
6GZ5|1|A2|U|2808
*
6GZ5|1|A2|A|3827
6GZ5|1|A2|G|3828

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AP

ribosomal protein uL22

Chain AR

ribosomal protein eL19

Chain Ad

ribosomal protein eL31