J4_6GZ5_007
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GZ5_007 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.1049
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6GZ5|1|A2|G|3605
6GZ5|1|A2|A|3606
6GZ5|1|A2|C|3607
6GZ5|1|A2|U|3608
6GZ5|1|A2|G|3609
*
6GZ5|1|A2|C|3621
6GZ5|1|A2|A|3622
6GZ5|1|A2|A|3623
6GZ5|1|A2|A|3624
6GZ5|1|A2|G|3625
*
6GZ5|1|A2|U|3661
6GZ5|1|A2|G|3662
6GZ5|1|A2|A|3663
6GZ5|1|A2|U|3664
6GZ5|1|A2|U|3665
*
6GZ5|1|A2|A|3792
6GZ5|1|A2|U|3793
6GZ5|1|A2|G|3794
6GZ5|1|A2|A|3795
6GZ5|1|A2|A|3796
6GZ5|1|A2|C|3797
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AA
- ribosomal protein uL2
- Chain An
- ribosomal protein eL41
- Chain Ap
- ribosomal protein eL43
- Chain B1
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: