J4_6GZ5_010

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAA*UC*GUG*CGCC

Length

13 nucleotides

Bulged bases

6GZ5|1|A2|A|4551

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ5|1|A2|G|4549
6GZ5|1|A2|U|4550
6GZ5|1|A2|A|4551
6GZ5|1|A2|A|4552
*
6GZ5|1|A2|U|4582
6GZ5|1|A2|C|4583
*
6GZ5|1|A2|G|4638
6GZ5|1|A2|U|4639
6GZ5|1|A2|G|4640
*
6GZ5|1|A2|C|4674
6GZ5|1|A2|G|4675
6GZ5|1|A2|C|4676
6GZ5|1|A2|C|4677

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

ribosomal protein uL3

Chain AO

ribosomal protein uL13

Chain AV

ribosomal protein uL14