J4_6GZQ_002

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GZQ_002 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1719

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

6GZQ|1|A1|C|322
6GZQ|1|A1|G|323
6GZQ|1|A1|A|324
6GZQ|1|A1|A|325
6GZQ|1|A1|G|326
*
6GZQ|1|A1|C|341
6GZQ|1|A1|G|342
6GZQ|1|A1|C|343
6GZQ|1|A1|C|344
*
6GZQ|1|A1|G|348
6GZQ|1|A1|A|349
6GZQ|1|A1|G|350
*
6GZQ|1|A1|C|362
6GZQ|1|A1|G|363
6GZQ|1|A1|U|364
6GZQ|1|A1|A|365
6GZQ|1|A1|G|366

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain E1

50S ribosomal protein L4

Chain T1

50S ribosomal protein L24