J4_6GZQ_017
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CGAUAAA*UC*GCGC*GG
- Length
- 15 nucleotides
- Bulged bases
- 6GZQ|1|A1|G|1319, 6GZQ|1|A1|A|1320, 6GZQ|1|A1|U|1321, 6GZQ|1|A1|A|1322, 6GZQ|1|A1|C|1695, 6GZQ|1|A1|G|1696
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GZQ_017 not in the Motif Atlas
- Homologous match to J4_7A0S_004
- Geometric discrepancy: 0.1468
- The information below is about J4_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6GZQ|1|A1|C|1318
6GZQ|1|A1|G|1319
6GZQ|1|A1|A|1320
6GZQ|1|A1|U|1321
6GZQ|1|A1|A|1322
6GZQ|1|A1|A|1323
6GZQ|1|A1|A|1324
*
6GZQ|1|A1|U|1342
6GZQ|1|A1|C|1343
*
6GZQ|1|A1|G|1694
6GZQ|1|A1|C|1695
6GZQ|1|A1|G|1696
6GZQ|1|A1|C|1697
*
6GZQ|1|A1|G|2033
6GZQ|1|A1|G|2034
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain M1
- 50S ribosomal protein L17
- Chain R1
- 50S ribosomal protein L22
- Chain a1
- 50S ribosomal protein L32
Coloring options: