J4_6GZQ_020

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

6GZQ|1|A1|A|1995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GZQ_020 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1994

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6GZQ|1|A1|U|1866
6GZQ|1|A1|U|1867
6GZQ|1|A1|G|1868
*
6GZQ|1|A1|C|1929
6GZQ|1|A1|G|1930
*
6GZQ|1|A1|C|1948
6GZQ|1|A1|C|1949
6GZQ|1|A1|U|1950
6GZQ|1|A1|A|1951
6GZQ|1|A1|A|1952
6GZQ|1|A1|G|1953
6GZQ|1|A1|G|1954
6GZQ|1|A1|U|1955
6GZQ|1|A1|A|1956
6GZQ|1|A1|G|1957
*
6GZQ|1|A1|C|1991
6GZQ|1|A1|G|1992
6GZQ|1|A1|A|1993
6GZQ|1|A1|A|1994
6GZQ|1|A1|A|1995
6GZQ|1|A1|A|1996

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain C1

50S ribosomal protein L2