J4_6GZX_001
3D structure
- PDB id
- 6GZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (ice)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.57 Å
Loop
- Sequence
- GUGGAUGCCUCGGCA*UGACCGAUAGCGCACCAGUAC*GGAAAGGUGAAAAGAAC*GAGUGAAAUAGAGCCUGAAAC
- Length
- 74 nucleotides
- Bulged bases
- 6GZX|1|A1|C|34, 6GZX|1|A1|A|471, 6GZX|1|A1|U|476, 6GZX|1|A1|C|479, 6GZX|1|A1|C|481, 6GZX|1|A1|C|484, 6GZX|1|A1|U|531, 6GZX|1|A1|G|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZX|1|A1|G|24
6GZX|1|A1|U|25
6GZX|1|A1|G|26
6GZX|1|A1|G|27
6GZX|1|A1|A|28
6GZX|1|A1|U|29
6GZX|1|A1|G|30
6GZX|1|A1|C|31
6GZX|1|A1|C|32
6GZX|1|A1|U|33
6GZX|1|A1|C|34
6GZX|1|A1|G|35
6GZX|1|A1|G|36
6GZX|1|A1|C|37
6GZX|1|A1|A|38
*
6GZX|1|A1|U|469
6GZX|1|A1|G|470
6GZX|1|A1|A|471
6GZX|1|A1|C|472
6GZX|1|A1|C|473
6GZX|1|A1|G|474
6GZX|1|A1|A|475
6GZX|1|A1|U|476
6GZX|1|A1|A|477
6GZX|1|A1|G|478
6GZX|1|A1|C|479
6GZX|1|A1|G|480
6GZX|1|A1|C|481
6GZX|1|A1|A|482
6GZX|1|A1|C|483
6GZX|1|A1|C|484
6GZX|1|A1|A|485
6GZX|1|A1|G|486
6GZX|1|A1|U|487
6GZX|1|A1|A|488
6GZX|1|A1|C|489
*
6GZX|1|A1|G|496
6GZX|1|A1|G|497
6GZX|1|A1|A|498
6GZX|1|A1|A|499
6GZX|1|A1|A|500
6GZX|1|A1|G|501
6GZX|1|A1|G|502
6GZX|1|A1|U|503
6GZX|1|A1|G|504
6GZX|1|A1|A|505
6GZX|1|A1|A|506
6GZX|1|A1|A|507
6GZX|1|A1|A|508
6GZX|1|A1|G|509
6GZX|1|A1|A|510
6GZX|1|A1|A|511
6GZX|1|A1|C|512
*
6GZX|1|A1|G|523
6GZX|1|A1|A|524
6GZX|1|A1|G|525
6GZX|1|A1|U|526
6GZX|1|A1|G|527
6GZX|1|A1|A|528
6GZX|1|A1|A|529
6GZX|1|A1|A|530
6GZX|1|A1|U|531
6GZX|1|A1|A|532
6GZX|1|A1|G|533
6GZX|1|A1|A|534
6GZX|1|A1|G|535
6GZX|1|A1|C|536
6GZX|1|A1|C|537
6GZX|1|A1|U|538
6GZX|1|A1|G|539
6GZX|1|A1|A|540
6GZX|1|A1|A|541
6GZX|1|A1|A|542
6GZX|1|A1|C|543
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain E1
- 50S ribosomal protein L4
- Chain P1
- 50S ribosomal protein L20
- Chain R1
- 50S ribosomal protein L22
- Chain S1
- 50S ribosomal protein L23
- Chain T1
- 50S ribosomal protein L24
- Chain a1
- 50S ribosomal protein L32
- Chain c1
- 50S ribosomal protein L34
Coloring options: