J4_6GZX_005

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GAC*GCCAGAAGCGC*GCGUGGUGGGGAAGCCC*GGGUGACAACC

Length

42 nucleotides

Bulged bases

6GZX|1|A1|A|1493, 6GZX|1|A1|C|1592

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A1|G|1492
6GZX|1|A1|A|1493
6GZX|1|A1|C|1494
*
6GZX|1|A1|G|1515
6GZX|1|A1|C|1516
6GZX|1|A1|C|1517
6GZX|1|A1|A|1518
6GZX|1|A1|G|1519
6GZX|1|A1|A|1520
6GZX|1|A1|A|1521
6GZX|1|A1|G|1522
6GZX|1|A1|C|1523
6GZX|1|A1|G|1524
6GZX|1|A1|C|1525
*
6GZX|1|A1|G|1565
6GZX|1|A1|C|1566
6GZX|1|A1|G|1567
6GZX|1|A1|U|1568
6GZX|1|A1|G|1569
6GZX|1|A1|G|1570
6GZX|1|A1|U|1571
6GZX|1|A1|G|1572
6GZX|1|A1|G|1573
6GZX|1|A1|G|1574
6GZX|1|A1|G|1575
6GZX|1|A1|A|1576
6GZX|1|A1|A|1577
6GZX|1|A1|G|1578
6GZX|1|A1|C|1579
6GZX|1|A1|C|1580
6GZX|1|A1|C|1581
*
6GZX|1|A1|G|1586
6GZX|1|A1|G|1587
6GZX|1|A1|G|1588
6GZX|1|A1|U|1589
6GZX|1|A1|G|1590
6GZX|1|A1|A|1591
6GZX|1|A1|C|1592
6GZX|1|A1|A|1593
6GZX|1|A1|A|1594
6GZX|1|A1|C|1595
6GZX|1|A1|C|1596

Current chains

Chain A1

23S ribosomal RNA

Nearby chains