J4_6GZX_011

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CCUAGCCGAAGCUG*CAGCGCC*GAG*CGUAGGCGAAAGG

Length

37 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|C|316
6GZX|1|A2|C|317
6GZX|1|A2|U|318
6GZX|1|A2|A|319
6GZX|1|A2|G|320
6GZX|1|A2|C|321
6GZX|1|A2|C|322
6GZX|1|A2|G|323
6GZX|1|A2|A|324
6GZX|1|A2|A|325
6GZX|1|A2|G|326
6GZX|1|A2|C|327
6GZX|1|A2|U|328
6GZX|1|A2|G|329
*
6GZX|1|A2|C|338
6GZX|1|A2|A|339
6GZX|1|A2|G|340
6GZX|1|A2|C|341
6GZX|1|A2|G|342
6GZX|1|A2|C|343
6GZX|1|A2|C|344
*
6GZX|1|A2|G|348
6GZX|1|A2|A|349
6GZX|1|A2|G|350
*
6GZX|1|A2|C|362
6GZX|1|A2|G|363
6GZX|1|A2|U|364
6GZX|1|A2|A|365
6GZX|1|A2|G|366
6GZX|1|A2|G|367
6GZX|1|A2|C|368
6GZX|1|A2|G|369
6GZX|1|A2|A|370
6GZX|1|A2|A|371
6GZX|1|A2|A|372
6GZX|1|A2|G|373
6GZX|1|A2|G|374

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain E2

50S ribosomal protein L4

Chain T2

50S ribosomal protein L24