J4_6GZX_012

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGGUUCCU*AGGGUUAG*CUU*AACCCGUACC

Length

29 nucleotides

Bulged bases

6GZX|1|A2|U|1389, 6GZX|1|A2|A|1390, 6GZX|1|A2|U|1650

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|G|1357
6GZX|1|A2|G|1358
6GZX|1|A2|G|1359
6GZX|1|A2|U|1360
6GZX|1|A2|U|1361
6GZX|1|A2|C|1362
6GZX|1|A2|C|1363
6GZX|1|A2|U|1364
*
6GZX|1|A2|A|1384
6GZX|1|A2|G|1385
6GZX|1|A2|G|1386
6GZX|1|A2|G|1387
6GZX|1|A2|U|1388
6GZX|1|A2|U|1389
6GZX|1|A2|A|1390
6GZX|1|A2|G|1391
*
6GZX|1|A2|C|1452
6GZX|1|A2|U|1453
6GZX|1|A2|U|1454
*
6GZX|1|A2|A|1644
6GZX|1|A2|A|1645
6GZX|1|A2|C|1646
6GZX|1|A2|C|1647
6GZX|1|A2|C|1648
6GZX|1|A2|G|1649
6GZX|1|A2|U|1650
6GZX|1|A2|A|1651
6GZX|1|A2|C|1652
6GZX|1|A2|C|1653

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain S2

50S ribosomal protein L23

Chain X2

50S ribosomal protein L29

Chain c2

50S ribosomal protein L34