J4_6GZX_014

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

UCUGGCGACUG*CACAGCUCUC*GGGAGCGACG*CGUAACGACCGGA

Length

44 nucleotides

Bulged bases

6GZX|1|A2|U|1808, 6GZX|1|A2|A|2005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|U|1799
6GZX|1|A2|C|1800
6GZX|1|A2|U|1801
6GZX|1|A2|G|1802
6GZX|1|A2|G|1803
6GZX|1|A2|C|1804
6GZX|1|A2|G|1805
6GZX|1|A2|A|1806
6GZX|1|A2|C|1807
6GZX|1|A2|U|1808
6GZX|1|A2|G|1809
*
6GZX|1|A2|C|1821
6GZX|1|A2|A|1822
6GZX|1|A2|C|1823
6GZX|1|A2|A|1824
6GZX|1|A2|G|1825
6GZX|1|A2|C|1826
6GZX|1|A2|U|1827
6GZX|1|A2|C|1828
6GZX|1|A2|U|1829
6GZX|1|A2|C|1830
*
6GZX|1|A2|G|1855
6GZX|1|A2|G|1856
6GZX|1|A2|G|1857
6GZX|1|A2|A|1858
6GZX|1|A2|G|1859
6GZX|1|A2|C|1860
6GZX|1|A2|G|1861
6GZX|1|A2|A|1862
6GZX|1|A2|C|1863
6GZX|1|A2|G|1864
*
6GZX|1|A2|C|1998
6GZX|1|A2|G|1999
6GZX|1|A2|U|2000
6GZX|1|A2|A|2001
6GZX|1|A2|A|2002
6GZX|1|A2|C|2003
6GZX|1|A2|G|2004
6GZX|1|A2|A|2005
6GZX|1|A2|C|2006
6GZX|1|A2|C|2007
6GZX|1|A2|G|2008
6GZX|1|A2|G|2009
6GZX|1|A2|A|2010

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain A4

Small subunit ribosomal RNA; SSU rRNA

Chain C2

50S ribosomal protein L2