J4_6GZX_015

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GCUUGCCCGG*CGGCGGC*GUCCUAAGGUAG*CGAAAAGC

Length

37 nucleotides

Bulged bases

6GZX|1|A2|C|1871, 6GZX|1|A2|A|1995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|G|1864
6GZX|1|A2|C|1865
6GZX|1|A2|U|1866
6GZX|1|A2|U|1867
6GZX|1|A2|G|1868
6GZX|1|A2|C|1869
6GZX|1|A2|C|1870
6GZX|1|A2|C|1871
6GZX|1|A2|G|1872
6GZX|1|A2|G|1873
*
6GZX|1|A2|C|1926
6GZX|1|A2|G|1927
6GZX|1|A2|G|1928
6GZX|1|A2|C|1929
6GZX|1|A2|G|1930
6GZX|1|A2|G|1931
6GZX|1|A2|C|1932
*
6GZX|1|A2|G|1946
6GZX|1|A2|U|1947
6GZX|1|A2|C|1948
6GZX|1|A2|C|1949
6GZX|1|A2|U|1950
6GZX|1|A2|A|1951
6GZX|1|A2|A|1952
6GZX|1|A2|G|1953
6GZX|1|A2|G|1954
6GZX|1|A2|U|1955
6GZX|1|A2|A|1956
6GZX|1|A2|G|1957
*
6GZX|1|A2|C|1991
6GZX|1|A2|G|1992
6GZX|1|A2|A|1993
6GZX|1|A2|A|1994
6GZX|1|A2|A|1995
6GZX|1|A2|A|1996
6GZX|1|A2|G|1997
6GZX|1|A2|C|1998

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain A4

Small subunit ribosomal RNA; SSU rRNA

Chain C2

50S ribosomal protein L2

Chain V4

Ribosome hibernation promoting factor