J4_6GZX_019

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CUACCCGGAAGAGG*CCAUGUGG*CCAAAG*CGCUUCCGGAUG

Length

40 nucleotides

Bulged bases

6GZX|1|A3|C|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A3|C|126
6GZX|1|A3|U|127
6GZX|1|A3|A|128
6GZX|1|A3|C|129
6GZX|1|A3|C|130
6GZX|1|A3|C|131
6GZX|1|A3|G|132
6GZX|1|A3|G|133
6GZX|1|A3|A|134
6GZX|1|A3|A|135
6GZX|1|A3|G|136
6GZX|1|A3|A|137
6GZX|1|A3|G|138
6GZX|1|A3|G|139
*
6GZX|1|A3|C|171
6GZX|1|A3|C|172
6GZX|1|A3|A|173
6GZX|1|A3|U|174
6GZX|1|A3|G|175
6GZX|1|A3|U|176
6GZX|1|A3|G|177
6GZX|1|A3|G|178
*
6GZX|1|A3|C|199
6GZX|1|A3|C|200
6GZX|1|A3|A|201
6GZX|1|A3|A|202
6GZX|1|A3|A|203
6GZX|1|A3|G|204
*
6GZX|1|A3|C|214
6GZX|1|A3|G|215
6GZX|1|A3|C|216
6GZX|1|A3|U|217
6GZX|1|A3|U|218
6GZX|1|A3|C|219
6GZX|1|A3|C|220
6GZX|1|A3|G|221
6GZX|1|A3|G|222
6GZX|1|A3|A|223
6GZX|1|A3|U|224
6GZX|1|A3|G|225

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain P3

30S ribosomal protein S16

Chain T3

30S ribosomal protein S20