J4_6GZX_020

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

UGGAGCAU*GUGCUACAAUGC*GCCCAGUUCGGAUUGG*CCAUGAAGCCGGAA

Length

50 nucleotides

Bulged bases

6GZX|1|A3|U|1221, 6GZX|1|A3|U|1283, 6GZX|1|A3|U|1288, 6GZX|1|A3|C|1316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A3|U|920
6GZX|1|A3|G|921
6GZX|1|A3|G|922
6GZX|1|A3|A|923
6GZX|1|A3|G|924
6GZX|1|A3|C|925
6GZX|1|A3|A|926
6GZX|1|A3|U|927
*
6GZX|1|A3|G|1212
6GZX|1|A3|U|1213
6GZX|1|A3|G|1214
6GZX|1|A3|C|1215
6GZX|1|A3|U|1216
6GZX|1|A3|A|1217
6GZX|1|A3|C|1218
6GZX|1|A3|A|1219
6GZX|1|A3|A|1220
6GZX|1|A3|U|1221
6GZX|1|A3|G|1222
6GZX|1|A3|C|1223
*
6GZX|1|A3|G|1276
6GZX|1|A3|C|1277
6GZX|1|A3|C|1278
6GZX|1|A3|C|1279
6GZX|1|A3|A|1280
6GZX|1|A3|G|1281
6GZX|1|A3|U|1282
6GZX|1|A3|U|1283
6GZX|1|A3|C|1284
6GZX|1|A3|G|1285
6GZX|1|A3|G|1286
6GZX|1|A3|A|1287
6GZX|1|A3|U|1288
6GZX|1|A3|U|1289
6GZX|1|A3|G|1290
6GZX|1|A3|G|1291
*
6GZX|1|A3|C|1308
6GZX|1|A3|C|1309
6GZX|1|A3|A|1310
6GZX|1|A3|U|1311
6GZX|1|A3|G|1312
6GZX|1|A3|A|1313
6GZX|1|A3|A|1314
6GZX|1|A3|G|1315
6GZX|1|A3|C|1316
6GZX|1|A3|C|1317
6GZX|1|A3|G|1318
6GZX|1|A3|G|1319
6GZX|1|A3|A|1320
6GZX|1|A3|A|1321

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain G3

30S ribosomal protein S7

Chain I3

30S ribosomal protein S9

Chain J3

30S ribosomal protein S10

Chain M3

30S ribosomal protein S13

Chain S3

30S ribosomal protein S19

Chain U3

30S ribosomal protein Thx

Chain V3

Ribosome hibernation promoting factor

Chain Z1

50S ribosomal protein L31