J4_6GZX_022

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GUGAGUAACGCGUGG*CCGCGUC*GUAG*CCAC

Length

30 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A4|G|106
6GZX|1|A4|U|107
6GZX|1|A4|G|108
6GZX|1|A4|A|109
6GZX|1|A4|G|110
6GZX|1|A4|U|111
6GZX|1|A4|A|112
6GZX|1|A4|A|113
6GZX|1|A4|C|114
6GZX|1|A4|G|115
6GZX|1|A4|C|116
6GZX|1|A4|G|117
6GZX|1|A4|U|118
6GZX|1|A4|G|119
6GZX|1|A4|G|120
*
6GZX|1|A4|C|229
6GZX|1|A4|C|230
6GZX|1|A4|G|231
6GZX|1|A4|C|232
6GZX|1|A4|G|233
6GZX|1|A4|U|234
6GZX|1|A4|C|235
*
6GZX|1|A4|G|281
6GZX|1|A4|U|282
6GZX|1|A4|A|283
6GZX|1|A4|G|284
*
6GZX|1|A4|C|306
6GZX|1|A4|C|307
6GZX|1|A4|A|308
6GZX|1|A4|C|309

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain L4

30S ribosomal protein S12

Chain P4

30S ribosomal protein S16

Chain Q4

30S ribosomal protein S17