J4_6GZX_024
3D structure
- PDB id
- 6GZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (ice)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.57 Å
Loop
- Sequence
- GGUGGAGCAUGUGGUUUAAUUC*GAAGAACCUUACCAG*CUGGGCGACACACGUGCUAC*GGAAUC
- Length
- 63 nucleotides
- Bulged bases
- 6GZX|1|A4|U|933, 6GZX|1|A4|A|952, 6GZX|1|A4|G|953, 6GZX|1|A4|A|955, 6GZX|1|A4|C|956, 6GZX|1|A4|C|957, 6GZX|1|A4|U|958, 6GZX|1|A4|A|1206, 6GZX|1|A4|A|1208, 6GZX|1|A4|U|1322
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZX|1|A4|G|918
6GZX|1|A4|G|919
6GZX|1|A4|U|920
6GZX|1|A4|G|921
6GZX|1|A4|G|922
6GZX|1|A4|A|923
6GZX|1|A4|G|924
6GZX|1|A4|C|925
6GZX|1|A4|A|926
6GZX|1|A4|U|927
6GZX|1|A4|G|928
6GZX|1|A4|U|929
6GZX|1|A4|G|930
6GZX|1|A4|G|931
6GZX|1|A4|U|932
6GZX|1|A4|U|933
6GZX|1|A4|U|934
6GZX|1|A4|A|935
6GZX|1|A4|A|936
6GZX|1|A4|U|937
6GZX|1|A4|U|938
6GZX|1|A4|C|939
*
6GZX|1|A4|G|950
6GZX|1|A4|A|951
6GZX|1|A4|A|952
6GZX|1|A4|G|953
6GZX|1|A4|A|954
6GZX|1|A4|A|955
6GZX|1|A4|C|956
6GZX|1|A4|C|957
6GZX|1|A4|U|958
6GZX|1|A4|U|959
6GZX|1|A4|A|960
6GZX|1|A4|C|961
6GZX|1|A4|C|962
6GZX|1|A4|A|963
6GZX|1|A4|G|964
*
6GZX|1|A4|C|1199
6GZX|1|A4|U|1200
6GZX|1|A4|G|1201
6GZX|1|A4|G|1202
6GZX|1|A4|G|1203
6GZX|1|A4|C|1204
6GZX|1|A4|G|1205
6GZX|1|A4|A|1206
6GZX|1|A4|C|1207
6GZX|1|A4|A|1208
6GZX|1|A4|C|1209
6GZX|1|A4|A|1210
6GZX|1|A4|C|1211
6GZX|1|A4|G|1212
6GZX|1|A4|U|1213
6GZX|1|A4|G|1214
6GZX|1|A4|C|1215
6GZX|1|A4|U|1216
6GZX|1|A4|A|1217
6GZX|1|A4|C|1218
*
6GZX|1|A4|G|1318
6GZX|1|A4|G|1319
6GZX|1|A4|A|1320
6GZX|1|A4|A|1321
6GZX|1|A4|U|1322
6GZX|1|A4|C|1323
Current chains
- Chain A4
- 16S ribosomal RNA
Nearby chains
- Chain G4
- 30S ribosomal protein S7
- Chain I4
- 30S ribosomal protein S9
- Chain J4
- 30S ribosomal protein S10
- Chain M4
- 30S ribosomal protein S13
- Chain N4
- 30S ribosomal protein S14 type Z
- Chain S4
- 30S ribosomal protein S19
- Chain U4
- 30S ribosomal protein Thx
- Chain V4
- Ribosome hibernation promoting factor
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