J4_6GZX_025
3D structure
- PDB id
- 6GZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (ice)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.57 Å
Loop
- Sequence
- GUCGUCAGCUCGUG*UGUUG*CGCAACGAGCGCAACCCCCGCCG*CGGGACUGCCCGCGAAAGCGGGAGGAAGGAGGGGACGACGUC
- Length
- 84 nucleotides
- Bulged bases
- 6GZX|1|A4|C|1053, 6GZX|1|A4|U|1068, 6GZX|1|A4|C|1097, 6GZX|1|A4|G|1099, 6GZX|1|A4|U|1141, 6GZX|1|A4|A|1164, 6GZX|1|A4|G|1165
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZX|1|A4|G|1043
6GZX|1|A4|U|1044
6GZX|1|A4|C|1045
6GZX|1|A4|G|1046
6GZX|1|A4|U|1047
6GZX|1|A4|C|1048
6GZX|1|A4|A|1049
6GZX|1|A4|G|1050
6GZX|1|A4|C|1051
6GZX|1|A4|U|1052
6GZX|1|A4|C|1053
6GZX|1|A4|G|1054
6GZX|1|A4|U|1055
6GZX|1|A4|G|1056
*
6GZX|1|A4|U|1065
6GZX|1|A4|G|1066
6GZX|1|A4|U|1067
6GZX|1|A4|U|1068
6GZX|1|A4|G|1069
*
6GZX|1|A4|C|1080
6GZX|1|A4|G|1081
6GZX|1|A4|C|1082
6GZX|1|A4|A|1083
6GZX|1|A4|A|1084
6GZX|1|A4|C|1085
6GZX|1|A4|G|1086
6GZX|1|A4|A|1087
6GZX|1|A4|G|1088
6GZX|1|A4|C|1089
6GZX|1|A4|G|1090
6GZX|1|A4|C|1091
6GZX|1|A4|A|1092
6GZX|1|A4|A|1093
6GZX|1|A4|C|1094
6GZX|1|A4|C|1095
6GZX|1|A4|C|1096
6GZX|1|A4|C|1097
6GZX|1|A4|C|1098
6GZX|1|A4|G|1099
6GZX|1|A4|C|1100
6GZX|1|A4|C|1101
6GZX|1|A4|G|1102
*
6GZX|1|A4|C|1135
6GZX|1|A4|G|1136
6GZX|1|A4|G|1137
6GZX|1|A4|G|1138
6GZX|1|A4|A|1139
6GZX|1|A4|C|1140
6GZX|1|A4|U|1141
6GZX|1|A4|G|1142
6GZX|1|A4|C|1143
6GZX|1|A4|C|1144
6GZX|1|A4|C|1145
6GZX|1|A4|G|1146
6GZX|1|A4|C|1147
6GZX|1|A4|G|1148
6GZX|1|A4|A|1149
6GZX|1|A4|A|1150
6GZX|1|A4|A|1151
6GZX|1|A4|G|1152
6GZX|1|A4|C|1153
6GZX|1|A4|G|1154
6GZX|1|A4|G|1155
6GZX|1|A4|G|1156
6GZX|1|A4|A|1157
6GZX|1|A4|G|1158
6GZX|1|A4|G|1159
6GZX|1|A4|A|1160
6GZX|1|A4|A|1161
6GZX|1|A4|G|1162
6GZX|1|A4|G|1163
6GZX|1|A4|A|1164
6GZX|1|A4|G|1165
6GZX|1|A4|G|1166
6GZX|1|A4|G|1167
6GZX|1|A4|G|1168
6GZX|1|A4|A|1169
6GZX|1|A4|C|1170
6GZX|1|A4|G|1171
6GZX|1|A4|A|1172
6GZX|1|A4|C|1173
6GZX|1|A4|G|1174
6GZX|1|A4|U|1175
6GZX|1|A4|C|1176
Current chains
- Chain A4
- 16S ribosomal RNA
Nearby chains
- Chain B4
- 30S ribosomal protein S2
- Chain C4
- 30S ribosomal protein S3
- Chain E4
- 30S ribosomal protein S5
- Chain G4
- 30S ribosomal protein S7
- Chain I4
- 30S ribosomal protein S9
- Chain J4
- 30S ribosomal protein S10
- Chain N4
- 30S ribosomal protein S14 type Z
- Chain V4
- Ribosome hibernation promoting factor
- Chain X3
- Ribosome hibernation promoting factor
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