J4_6GZZ_004

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGGCUCU*AGGGAC*GGAAGG*CCGC

Length

23 nucleotides

Bulged bases

6GZZ|1|A1|A|2748

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A1|G|2657
6GZZ|1|A1|G|2658
6GZZ|1|A1|G|2659
6GZZ|1|A1|C|2660
6GZZ|1|A1|U|2661
6GZZ|1|A1|C|2662
6GZZ|1|A1|U|2663
*
6GZZ|1|A1|A|2685
6GZZ|1|A1|G|2686
6GZZ|1|A1|G|2687
6GZZ|1|A1|G|2688
6GZZ|1|A1|A|2689
6GZZ|1|A1|C|2690
*
6GZZ|1|A1|G|2746
6GZZ|1|A1|G|2747
6GZZ|1|A1|A|2748
6GZZ|1|A1|A|2749
6GZZ|1|A1|G|2750
6GZZ|1|A1|G|2751
*
6GZZ|1|A1|C|2783
6GZZ|1|A1|C|2784
6GZZ|1|A1|G|2785
6GZZ|1|A1|C|2786

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L3

Chain I1

50S ribosomal protein L13

Chain J1

50S ribosomal protein L14