J4_6GZZ_006

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGGCGAG*CGUAG*CGAGUC*GGCGCAAACGGCCCGCACGCGGGCCGAAAAGUCC

Length

52 nucleotides

Bulged bases

6GZZ|1|A2|U|653, 6GZZ|1|A2|C|679, 6GZZ|1|A2|A|680, 6GZZ|1|A2|G|684, 6GZZ|1|A2|A|691, 6GZZ|1|A2|G|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A2|G|623
6GZZ|1|A2|G|624
6GZZ|1|A2|G|625
6GZZ|1|A2|C|626
6GZZ|1|A2|G|627
6GZZ|1|A2|A|628
6GZZ|1|A2|G|629
*
6GZZ|1|A2|C|651
6GZZ|1|A2|G|652
6GZZ|1|A2|U|653
6GZZ|1|A2|A|654
6GZZ|1|A2|G|655
*
6GZZ|1|A2|C|662
6GZZ|1|A2|G|663
6GZZ|1|A2|A|664
6GZZ|1|A2|G|665
6GZZ|1|A2|U|666
6GZZ|1|A2|C|667
*
6GZZ|1|A2|G|675
6GZZ|1|A2|G|676
6GZZ|1|A2|C|677
6GZZ|1|A2|G|678
6GZZ|1|A2|C|679
6GZZ|1|A2|A|680
6GZZ|1|A2|A|681
6GZZ|1|A2|A|682
6GZZ|1|A2|C|683
6GZZ|1|A2|G|684
6GZZ|1|A2|G|685
6GZZ|1|A2|C|686
6GZZ|1|A2|C|687
6GZZ|1|A2|C|688
6GZZ|1|A2|G|689
6GZZ|1|A2|C|690
6GZZ|1|A2|A|691
6GZZ|1|A2|C|692
6GZZ|1|A2|G|693
6GZZ|1|A2|C|694
6GZZ|1|A2|G|695
6GZZ|1|A2|G|696
6GZZ|1|A2|G|697
6GZZ|1|A2|C|698
6GZZ|1|A2|C|699
6GZZ|1|A2|G|700
6GZZ|1|A2|A|701
6GZZ|1|A2|A|702
6GZZ|1|A2|A|703
6GZZ|1|A2|A|704
6GZZ|1|A2|G|705
6GZZ|1|A2|U|706
6GZZ|1|A2|C|707
6GZZ|1|A2|C|708

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain E2

50S ribosomal protein L4

Chain K2

50S ribosomal protein L15

Chain d2

50S ribosomal protein L35