J4_6GZZ_007

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GACCUAAGGU*GCCGAAGGGCAG*CCCUUCCC*GGGAAC

Length

36 nucleotides

Bulged bases

6GZZ|1|A2|A|1397, 6GZZ|1|A2|A|1427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A2|G|1396
6GZZ|1|A2|A|1397
6GZZ|1|A2|C|1398
6GZZ|1|A2|C|1399
6GZZ|1|A2|U|1400
6GZZ|1|A2|A|1401
6GZZ|1|A2|A|1402
6GZZ|1|A2|G|1403
6GZZ|1|A2|G|1404
6GZZ|1|A2|U|1405
*
6GZZ|1|A2|G|1422
6GZZ|1|A2|C|1423
6GZZ|1|A2|C|1424
6GZZ|1|A2|G|1425
6GZZ|1|A2|A|1426
6GZZ|1|A2|A|1427
6GZZ|1|A2|G|1428
6GZZ|1|A2|G|1429
6GZZ|1|A2|G|1430
6GZZ|1|A2|C|1431
6GZZ|1|A2|A|1432
6GZZ|1|A2|G|1433
*
6GZZ|1|A2|C|1450
6GZZ|1|A2|C|1451
6GZZ|1|A2|C|1452
6GZZ|1|A2|U|1453
6GZZ|1|A2|U|1454
6GZZ|1|A2|C|1455
6GZZ|1|A2|C|1456
6GZZ|1|A2|C|1457
*
6GZZ|1|A2|G|1641
6GZZ|1|A2|G|1642
6GZZ|1|A2|G|1643
6GZZ|1|A2|A|1644
6GZZ|1|A2|A|1645
6GZZ|1|A2|C|1646

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L2

Chain S2

50S ribosomal protein L23

Chain c2

50S ribosomal protein L34