3D structure

PDB id
6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
T. thermophilus hibernating 100S ribosome (amc)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.13 Å

Loop

Sequence
CAAG*CGGACGGGUG*CACAG*CACUCCUACGGGAGGCAG
Length
37 nucleotides
Bulged bases
6GZZ|1|A3|A|60, 6GZZ|1|A3|G|101, 6GZZ|1|A3|A|102, 6GZZ|1|A3|A|339
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GZZ|1|A3|C|58
6GZZ|1|A3|A|59
6GZZ|1|A3|A|60
6GZZ|1|A3|G|61
*
6GZZ|1|A3|C|99
6GZZ|1|A3|G|100
6GZZ|1|A3|G|101
6GZZ|1|A3|A|102
6GZZ|1|A3|C|103
6GZZ|1|A3|G|104
6GZZ|1|A3|G|105
6GZZ|1|A3|G|106
6GZZ|1|A3|U|107
6GZZ|1|A3|G|108
*
6GZZ|1|A3|C|307
6GZZ|1|A3|A|308
6GZZ|1|A3|C|309
6GZZ|1|A3|A|310
6GZZ|1|A3|G|311
*
6GZZ|1|A3|C|332
6GZZ|1|A3|A|333
6GZZ|1|A3|C|334
6GZZ|1|A3|U|335
6GZZ|1|A3|C|336
6GZZ|1|A3|C|337
6GZZ|1|A3|U|338
6GZZ|1|A3|A|339
6GZZ|1|A3|C|340
6GZZ|1|A3|G|341
6GZZ|1|A3|G|342
6GZZ|1|A3|G|343
6GZZ|1|A3|A|344
6GZZ|1|A3|G|345
6GZZ|1|A3|G|346
6GZZ|1|A3|C|347
6GZZ|1|A3|A|348
6GZZ|1|A3|G|349

Current chains

Chain A3
16S ribosomal RNA

Nearby chains

Chain J1
50S ribosomal protein L14
Chain O1
50S ribosomal protein L19
Chain P3
30S ribosomal protein S16
Chain T3
30S ribosomal protein S20

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2918 s
Application loaded.