J4_6GZZ_014

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGUUUAAUUC*GAAGAACCUUACCAGGCCUUGACAUGCUAGGGAACCCGG*CUGGGGUGCCCCGCGAGGGGAGCCCUAGCACAGGUGCUGCAUGGCC*GGUCAGCAUGGCCCUUACGGCCUGGGCGACAC

Length

127 nucleotides

Bulged bases

6GZZ|1|A3|A|952, 6GZZ|1|A3|G|953, 6GZZ|1|A3|G|970, 6GZZ|1|A3|U|977, 6GZZ|1|A3|A|978, 6GZZ|1|A3|G|980, 6GZZ|1|A3|A|983, 6GZZ|1|A3|U|998, 6GZZ|1|A3|G|1002, 6GZZ|1|A3|U|1003, 6GZZ|1|A3|G|1004, 6GZZ|1|A3|G|1009, 6GZZ|1|A3|C|1010, 6GZZ|1|A3|G|1011, 6GZZ|1|A3|G|1013, 6GZZ|1|A3|C|1019, 6GZZ|1|A3|C|1021, 6GZZ|1|A3|G|1024, 6GZZ|1|A3|C|1036, 6GZZ|1|A3|C|1191, 6GZZ|1|A3|U|1193, 6GZZ|1|A3|C|1198, 6GZZ|1|A3|C|1199, 6GZZ|1|A3|U|1200, 6GZZ|1|A3|A|1206, 6GZZ|1|A3|C|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A3|G|930
6GZZ|1|A3|G|931
6GZZ|1|A3|U|932
6GZZ|1|A3|U|933
6GZZ|1|A3|U|934
6GZZ|1|A3|A|935
6GZZ|1|A3|A|936
6GZZ|1|A3|U|937
6GZZ|1|A3|U|938
6GZZ|1|A3|C|939
*
6GZZ|1|A3|G|950
6GZZ|1|A3|A|951
6GZZ|1|A3|A|952
6GZZ|1|A3|G|953
6GZZ|1|A3|A|954
6GZZ|1|A3|A|955
6GZZ|1|A3|C|956
6GZZ|1|A3|C|957
6GZZ|1|A3|U|958
6GZZ|1|A3|U|959
6GZZ|1|A3|A|960
6GZZ|1|A3|C|961
6GZZ|1|A3|C|962
6GZZ|1|A3|A|963
6GZZ|1|A3|G|964
6GZZ|1|A3|G|965
6GZZ|1|A3|C|966
6GZZ|1|A3|C|967
6GZZ|1|A3|U|968
6GZZ|1|A3|U|969
6GZZ|1|A3|G|970
6GZZ|1|A3|A|971
6GZZ|1|A3|C|972
6GZZ|1|A3|A|973
6GZZ|1|A3|U|974
6GZZ|1|A3|G|975
6GZZ|1|A3|C|976
6GZZ|1|A3|U|977
6GZZ|1|A3|A|978
6GZZ|1|A3|G|979
6GZZ|1|A3|G|980
6GZZ|1|A3|G|981
6GZZ|1|A3|A|982
6GZZ|1|A3|A|983
6GZZ|1|A3|C|984
6GZZ|1|A3|C|985
6GZZ|1|A3|C|986
6GZZ|1|A3|G|987
6GZZ|1|A3|G|988
*
6GZZ|1|A3|C|997
6GZZ|1|A3|U|998
6GZZ|1|A3|G|999
6GZZ|1|A3|G|1000
6GZZ|1|A3|G|1001
6GZZ|1|A3|G|1002
6GZZ|1|A3|U|1003
6GZZ|1|A3|G|1004
6GZZ|1|A3|C|1005
6GZZ|1|A3|C|1006
6GZZ|1|A3|C|1007
6GZZ|1|A3|C|1008
6GZZ|1|A3|G|1009
6GZZ|1|A3|C|1010
6GZZ|1|A3|G|1011
6GZZ|1|A3|A|1012
6GZZ|1|A3|G|1013
6GZZ|1|A3|G|1014
6GZZ|1|A3|G|1015
6GZZ|1|A3|G|1016
6GZZ|1|A3|A|1017
6GZZ|1|A3|G|1018
6GZZ|1|A3|C|1019
6GZZ|1|A3|C|1020
6GZZ|1|A3|C|1021
6GZZ|1|A3|U|1022
6GZZ|1|A3|A|1023
6GZZ|1|A3|G|1024
6GZZ|1|A3|C|1025
6GZZ|1|A3|A|1026
6GZZ|1|A3|C|1027
6GZZ|1|A3|A|1028
6GZZ|1|A3|G|1029
6GZZ|1|A3|G|1030
6GZZ|1|A3|U|1031
6GZZ|1|A3|G|1032
6GZZ|1|A3|C|1033
6GZZ|1|A3|U|1034
6GZZ|1|A3|G|1035
6GZZ|1|A3|C|1036
6GZZ|1|A3|A|1037
6GZZ|1|A3|U|1038
6GZZ|1|A3|G|1039
6GZZ|1|A3|G|1040
6GZZ|1|A3|C|1041
6GZZ|1|A3|C|1042
*
6GZZ|1|A3|G|1178
6GZZ|1|A3|G|1179
6GZZ|1|A3|U|1180
6GZZ|1|A3|C|1181
6GZZ|1|A3|A|1182
6GZZ|1|A3|G|1183
6GZZ|1|A3|C|1184
6GZZ|1|A3|A|1185
6GZZ|1|A3|U|1186
6GZZ|1|A3|G|1187
6GZZ|1|A3|G|1188
6GZZ|1|A3|C|1189
6GZZ|1|A3|C|1190
6GZZ|1|A3|C|1191
6GZZ|1|A3|U|1192
6GZZ|1|A3|U|1193
6GZZ|1|A3|A|1194
6GZZ|1|A3|C|1195
6GZZ|1|A3|G|1196
6GZZ|1|A3|G|1197
6GZZ|1|A3|C|1198
6GZZ|1|A3|C|1199
6GZZ|1|A3|U|1200
6GZZ|1|A3|G|1201
6GZZ|1|A3|G|1202
6GZZ|1|A3|G|1203
6GZZ|1|A3|C|1204
6GZZ|1|A3|G|1205
6GZZ|1|A3|A|1206
6GZZ|1|A3|C|1207
6GZZ|1|A3|A|1208
6GZZ|1|A3|C|1209

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain C3

30S ribosomal protein S3

Chain J3

30S ribosomal protein S10

Chain M3

30S ribosomal protein S13

Chain N3

30S ribosomal protein S14 type Z

Chain S3

30S ribosomal protein S19

Chain U3

30S ribosomal protein Thx

Chain V3

Ribosome hibernation promoting factor